PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129036.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 335aa    MW: 38416.8 Da    PI: 6.2761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14132178354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  XP_009129036.1 132 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 178
                     79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-4132181No hitNo description
PfamPF000101.1E-11132178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14133187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14133186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.2E-5214263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0016036Biological Processcellular response to phosphate starvation
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MYAMKEEDCL QNFHNLQDYQ DQFLLHHHPQ ILPWSSLPSF DPTYFPSNPT RYPDSVPYFN  60
RRASSSSSFD YTDGFVSPPS MDHHHHPNHL KVLSEALGPI MRRGTSFGFD DEIMGKLSAQ  120
EVMDAKALAA SKSHSEAERR RRERINTHLA KLRSILPNTT KTDKASLLAE VIQHMKELKR  180
QTSLITDTSQ IPTECDDLTV DSAYNDEEGN LMIRVSFCCE DRTELMHDII NALKSLRLRI  240
HKAEIATVGG RVKNVLFLSR EDDDEYRRNF DGVDADNDDE EKRYNRASSI EEALKAVIDK  300
CVNNNDDNNN LDKSSSGSIT IKRQRTSKMV NRCYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588400.0AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0790330.0AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0863830.0AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
GenBankDQ2056790.0DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129036.10.0PREDICTED: transcription factor AIG1-like
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLM4ECK00.0M4ECK0_BRARP; Uncharacterized protein
STRINGBra026510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.10.0basic helix-loop-helix 32